CDS

Accession Number TCMCG015C26365
gbkey CDS
Protein Id XP_027126400.1
Location join(1848966..1849481,1850329..1850478,1850944..1851261,1851736..1852143)
Gene LOC113742692
GeneID 113742692
Organism Coffea arabica

Protein

Length 463aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA506972
db_source XM_027270599.1
Definition DNA-directed RNA polymerase I subunit rpa49 [Coffea arabica]

EGGNOG-MAPPER Annotation

COG_category K
Description A49-like RNA polymerase I associated factor
KEGG_TC -
KEGG_Module M00182        [VIEW IN KEGG]
KEGG_Reaction R00435        [VIEW IN KEGG]
R00441        [VIEW IN KEGG]
R00442        [VIEW IN KEGG]
R00443        [VIEW IN KEGG]
KEGG_rclass RC02795        [VIEW IN KEGG]
BRITE br01611        [VIEW IN KEGG]
ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
KEGG_ko ko:K03005        [VIEW IN KEGG]
EC -
KEGG_Pathway ko00230        [VIEW IN KEGG]
ko00240        [VIEW IN KEGG]
ko01100        [VIEW IN KEGG]
ko03020        [VIEW IN KEGG]
map00230        [VIEW IN KEGG]
map00240        [VIEW IN KEGG]
map01100        [VIEW IN KEGG]
map03020        [VIEW IN KEGG]
GOs GO:0000428        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003899        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005736        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006351        [VIEW IN EMBL-EBI]
GO:0006360        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016772        [VIEW IN EMBL-EBI]
GO:0016779        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0030880        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032774        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034062        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044452        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0055029        [VIEW IN EMBL-EBI]
GO:0061695        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097659        [VIEW IN EMBL-EBI]
GO:0097747        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCCACACCAAAGCAGAAGAAGAAGAGACCAATAAACCAAGAAATTCAGCAAGTAACGGAACCTGCTCAGGAGTACTCTAGGGAAAAAGAAGGAGGAGAGGAAGAACAAAGGGATGCAGAAGAGGCCGACCCCATAACATCAACAACAGCAGAAAAACCTGAGAAGAATGAGAAAAAGAAGCACAAGGAAACACTAGACGTCAAAATCGAAACTTTCGGTGAAAACCCTGATAAAATTTCTCCAATTGTGGGTTATTTTCCATCCGGGTACGATCCATTGAGGAGTTGGAAGGAAGGCGAAGAAGCGGGGCCTGAAGCCAAGGTTAAGGTTTACAAGAATAAGAAGAGGAGTAATAGGCTGCAGTTGGTGGTGAGCCCTAAGGTTGCTCAGGTTAATTTCGTTGGAACTAACTACTCTGGCGAGGCTACGGCGGCTCAGATGTGTACTTATGGTCTCGGAGTTTTTGACAAGATTAGCCAGACTCTGAAGATTGTTCCAATTGCAGCTAACAAGATATTCAGATTGGAACTGAGAGTTGCTGGGTTAGACCTACCTGAAAATGAAACTCCAGAAACTTTGAAGCATGAACTTACTGCAGAAGAGAAGGCTGACAAAATGAGAGAATTGACTCTTATGTATTCATCCAAGAAGACTATAAGACAGACTCAGAAACTGGAATCACTTCGTCAGAGACAAGATCCTGAAAGTCAGCAGGATTTGGACCAAAAATTAGGGGGTATTGAGATAAACAAAGAGGGGCTCGAGGTTACAGAGACTACAACTAGTGCTCGAAATATCCCACCCCATGATTTGTCTGCCACTACACCTCAAACAGCATATCCATTGCACAAGATTATCTTTAGCGGGGAGTGGGATTACCTTATGGACATTCTTGAAATTTCTCAAGCTGGAGCAGAAGTGACGTCTGATAAGTACCCGAGCTTTGTTTGCAATCGAGTATATAAATTGGATGATATTACGGATGAAGTGGAGAAGAGGCAGCTTGCTGGGATATTTTCATACATTACCCATCTTGTCAAGTTCAAGGATAAGCACTCCATGGATGGTGTTTCATCGGCAAAACATCATAAAATTCCTGGGATCTTGTACCAGAAGTTCTCTTCCTTGTATGCTAATTCGGACTCGAAGAGGATTGCAGATGACAAAAAGGATCTCCTTATCAGCTACGTCTTGGTGCTTACTTTATATGTTGACAATTTTCGGACAGACTTATCTGACATAGCGAAGGATCTGAGAATGAACCCAATAGCATTAAGACCTCACTATGAATATTTGGGCTGTAAGCTTGCGCGCGAGAAGCAATTGTTACTGGCGACACTATCTCTGCCGCTGCAATTCCCAACAGTGAGAAGGAAGCGGCGAAGGTAG
Protein:  
MATPKQKKKRPINQEIQQVTEPAQEYSREKEGGEEEQRDAEEADPITSTTAEKPEKNEKKKHKETLDVKIETFGENPDKISPIVGYFPSGYDPLRSWKEGEEAGPEAKVKVYKNKKRSNRLQLVVSPKVAQVNFVGTNYSGEATAAQMCTYGLGVFDKISQTLKIVPIAANKIFRLELRVAGLDLPENETPETLKHELTAEEKADKMRELTLMYSSKKTIRQTQKLESLRQRQDPESQQDLDQKLGGIEINKEGLEVTETTTSARNIPPHDLSATTPQTAYPLHKIIFSGEWDYLMDILEISQAGAEVTSDKYPSFVCNRVYKLDDITDEVEKRQLAGIFSYITHLVKFKDKHSMDGVSSAKHHKIPGILYQKFSSLYANSDSKRIADDKKDLLISYVLVLTLYVDNFRTDLSDIAKDLRMNPIALRPHYEYLGCKLAREKQLLLATLSLPLQFPTVRRKRRR